Protein-energy malnutrition
- Proportion of children with edema & weight-for-age z-score
- Subtract proportion of edema among WHZ
- Proportion of children under 5 with WHZ
- Subtract prevalence of WHZ
- Multiply prevalence of WHZ
- Multiply prevalence of WHZ
- Zero out prevalence of population over 5 years old
- Subtract from the prevalence of WHZ
- Scale prevalence to equal prevalence from full parameter model for >5 years (
- Apply ratio to prevalence to calculate incidence
- ST-GPR
- DisMod: Single parameter proportion model
- DisMod: Full paramter model (WHZ
- Comorbidity correction (COMO)
- Calculate weight-for-age (WHZ) z-score using WHO Growth Standards (2006)
- Collapse into geography-year-age-sex proportion of WHZ
Pruritus
Psoriasis
- Format codes, Map to modeling causes
- Apply age and sex restrictions, Aggregate and apply population denominator
- Convert claims to prevalent cases
- Comorbidity correction (COMO)
- Dismod-MR 2.1
- Severity splits
Pulmonary arterial hypertension
- Age sex splitting
- Comorbidity correction (COMO)
- DisMod-MR2.1
- Meta-analysis of moderate, severe
- Severity splits
- Disability weights for each sequela
- Crosswalk
Pyoderma
- Age-sex splitting
- Adjustment from primary code to all code based on Claims data
- Comorbidity correction (COMO)
- Dismod-MR 2.1
Rabies
Refractive Error
- Age-sex splitting
- MR-BRT Sex Ratio Analysis
- Age Pattern analysis
- MR-BRT bias correction analysis for Alternative Case Defintion / Method
- Split into moderate and severe vision loss
- Squeeze into severity-specific vision loss envelope
- Comorbidity correction (COMO)
- DisMod-MR 2.1
Rheumatic Heart Disease
- Age-sex splitting
- CSMR from CODEm (nonendemic)
- CSMR from CODEm (endemic)
- Combine estimates for endemic and non-endemic models
- Comorbidity correction (COMO)
- DisMod endemic model
- DisMod non-endemic model
- Disability weights for each sequela
- Subtract RHD with heart failure
Rheumatoid arthritis
- Case definition adjustment
- MAD outliering
- Computing excess mortality from available incidence & CSMR data
- Age-sex splitting
- Comorbidity correction (COMO)
- Dismod-MR 2.1
- Meta-analysis of % mild, moderate, severe RA
- Severity splits
Scabies
- Age-sex splitting
- Adjustment from primary code to all code based on Claims data
- Comorbidity correction (COMO)
- Dismod-MR 2.1
Schistosomiasis
- Data prep and diagnostic adjustment
- Age-spit prepped data
- Run BRT environmental suitability map, data input file
- Run BRT environmental suitability map, run GBM
- Run BRT environmental suitability map, run GBM avg
- Run BRT environmental suitability map, optimize BRT
- Run BRT environmental suitability map, summary script
- Process environmental suitability map to produce PAR estimates
- Convert total prev of infection to prev of species-specific infection
- Prepare MDA coverage data
- Set constants for calculations
- Split total prev into mutually exclusive species-specific prev
- Convert prevalence of species-specific infection to prevalence of sequelae
- Comorbidity correction (COMO)
- Dismod-MR 2.1
Schizophrenia
- Age-sex splitting
- MR-BRT Sex Ratio Analysis
- MR-BRT Bias Correction Analysis for Alternative Case Defintion / Method
- Comorbidity correction (COMO)
- Dismod-MR 2.1
- Meta-analysis of % acute and residual schizophrenia
- Severity splits
Seborrhoeic Dermatitis
- Format codes, Map to modeling causes
- Apply age and sex restrictions, Aggregate and apply population denominator
- Convert claims to prevalent cases
- Comorbidity correction (COMO)
- Dismod-MR 2.1
- Severity splits
Sexual Violence
- Crosswalking
- Pipeline
- Calculate proportion of events resulting in physical injury (N-codes) and acute anxiety
- N-Code: calculate prevalence
- N-Code: calculate YLDs
- Anxiety: calculate prevalence
- Anxiety: calculate YLDs
- Calculate location-year specific percent treated
- % treated * treated duration + % untreated * untreated duration
- Collapse YLDs and prevalence over N-codes and anxiety
