Rabies
Refractive Error
- Comorbidity correction (COMO)
- Age-sex splitting
- MR-BRT Sex Ratio Analysis
- Age Pattern analysis
- MR-BRT bias correction analysis for Alternative Case Defintion / Method
- DisMod-MR 2.1
- Split into moderate and severe vision loss
- Squeeze into severity-specific vision loss envelope
Rheumatic Heart Disease
- Age-sex splitting
- Comorbidity correction (COMO)
- CSMR from CODEm (nonendemic)
- CSMR from CODEm (endemic)
- Disability weights for each sequela
- DisMod endemic model
- DisMod non-endemic model
- Subtract RHD with heart failure
- Combine estimates for endemic and non-endemic models
Rheumatoid arthritis
- Case definition adjustment
- MAD outliering
- Comorbidity correction (COMO)
- Computing excess mortality from available incidence & CSMR data
- Dismod-MR 2.1
- Meta-analysis of % mild, moderate, severe RA
- Severity splits
- Age-sex splitting
Scabies
- Adjustment from primary code to all code based on Claims data
- Age-sex splitting
- Comorbidity correction (COMO)
- Dismod-MR 2.1
Schistosomiasis
- Data prep and diagnostic adjustment
- Age-spit prepped data
- Run BRT environmental suitability map, data input file
- Run BRT environmental suitability map, run GBM
- Run BRT environmental suitability map, run GBM avg
- Run BRT environmental suitability map, optimize BRT
- Run BRT environmental suitability map, summary script
- Process environmental suitability map to produce PAR estimates
- Comorbidity correction (COMO)
- Convert total prev of infection to prev of species-specific infection
- Dismod-MR 2.1
- Prepare MDA coverage data
- Set constants for calculations
- Split total prev into mutually exclusive species-specific prev
- Convert prevalence of species-specific infection to prevalence of sequelae
Schizophrenia
- Age-sex splitting
- MR-BRT Sex Ratio Analysis
- MR-BRT Bias Correction Analysis for Alternative Case Defintion / Method
- Comorbidity correction (COMO)
- Dismod-MR 2.1
- Meta-analysis of % acute and residual schizophrenia
- Severity splits
Seborrhoeic Dermatitis
- Format codes, Map to modeling causes
- Apply age and sex restrictions, Aggregate and apply population denominator
- Convert claims to prevalent cases
- Comorbidity correction (COMO)
- Dismod-MR 2.1
- Severity splits
Sexual Violence
- Crosswalking
- Pipeline
- Calculate proportion of events resulting in physical injury (N-codes) and acute anxiety
- N-Code: calculate prevalence
- N-Code: calculate YLDs
- Anxiety: calculate prevalence
- Anxiety: calculate YLDs
- Calculate location-year specific percent treated
- % treated * treated duration + % untreated * untreated duration
- Collapse YLDs and prevalence over N-codes and anxiety
Stroke
- 28 day survivorship
- Age sex splitting, bias adjustment
- CoDCorrect
- DisMod-MR 2.1
- Ratios of acute ischemic, chronic ischemic, acute hemorrhagic, and chronic hemorrhagic CSMR
- Comorbidity correction (COMO)
- Split non-subtype-specific survey data
- Scaled DisMod proportion models (chronic)
- Severity splits (chronic)
- Severity splits (acute)
- Scaled DisMod proportion models (acute)
Syphilis: Nonfatal health outcome estimation
- Meta-analyses of symptoms
- Severity splits
- Dismod-MR 22.1
- Adjustment from primary code to all code based on Claims data
- Comorbidity correction (COMO)
Tetanus
- Apply % mild, moderate/severe impairment due to neonatal tetanus
- Dismod-MR
- MR-BRT sex-specific model
- DisMod-MR age-specific model
- Comorbidity correction (COMO)
- DisMod-MR model
- Death rate = deaths / population
- Incidence = death rate / CFR
- Incidence of survival from neonatal tetanus - incidence of neonatal tetanus * (1 - CFR)
- Prevalence = incidence * duration
- Assume all tetanus cases are severe
- Severity splits
- Severity splits as in neonatal encephalopathy
Trachoma
- Comorbidity correction (COMO)
- Dismod-MR 2.1
- Multiply proportion by blindness envelope
- Multiply proportion by low vision envelope
- Split into moderate and severe vision loss
- Squeeze into severity-specific vision loss envelope
Trichomonas: Nonfatal health outcome estimation
- Meta-Analysis of symptoms
- Severity splits
- Dismod MR-2.1
- Comorbidity correction (COMO)
Trichuriasis
- Dismod-MR 2.1
- Prepare data for ST-GPR
- ST-GPR
- Compute age-specific ratios; apply ratio to ST-GPR output
- Compute proportion of cases that belong to health states
- Apply health state proportions to overall hookworm envelope
- Estimate prevlanece of severe wasting due to trichuriasis
- Estimate prevalence of asymptomatic trichuriasis
- Comorbidity Correction
- YLD Calculation
- Data preparation
